Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs9879197 chr3:124498276 C/T 3.86E-5 286 26.1 25.65 16.47 KM Plot
KIRP rs9879289 chr3:124498173 G/A 9.4E-7 285 25.97 26.27 16.4 KM Plot
KIRP rs9882808 chr3:124648705 C/T 0.000139 289 17.9 26.4 25.78 KM Plot
KIRP rs9899623 chr17:46094038 G/T 8.63E-10 284 25.7 25.13 9 KM Plot
KIRP rs9903423 chr17:30330700 T/C 8.49E-12 287 26.6 23.4 10.37 KM Plot
KIRP rs9916785 chr17:78499975 G/A 0.000104 286 26.38 23.4 17.13 KM Plot
KIRP rs9926961 chr16:8709711 A/G 5.53E-5 289 5.72 34.3 25.53 KM Plot
KIRP rs9929335 chr16:8710085 A/G 5.74E-5 288 5.72 34.3 25.5 KM Plot
KIRP rs9930877 chr16:976891 G/A 2.02E-6 276 27.43 24.13 14.83 KM Plot
KIRP rs9935855 chr16:8709405 C/A 5.77E-5 289 5.72 32.93 25.57 KM Plot
KIRP rs9936296 chr16:8709884 C/T 5.74E-5 288 5.72 34.3 25.5 KM Plot
KIRP rs9949772 chr18:31042633 A/G 0.000108 289 26.4 17.03 NA KM Plot
KIRP rs9954904 chr18:3290200 G/A 2.47E-6 286 25.97 25.35 11.13 KM Plot
KIRP rs9973536 chr2:100942243 C/T 0.000175 287 22.8 26 26.37 KM Plot
KIRP rs9973737 chr2:100942296 T/C 0.000178 287 22.8 26.2 25.5 KM Plot